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Pseudomonas tarimensis sp. nov., an endophytic bacteria isolated from Populus euphratica.

Identifieur interne : 001232 ( Main/Exploration ); précédent : 001231; suivant : 001233

Pseudomonas tarimensis sp. nov., an endophytic bacteria isolated from Populus euphratica.

Auteurs : Nusratgul Anwar [République populaire de Chine] ; Manziram Rozahon [République populaire de Chine] ; Bolatkhan Zayadan [Kazakhstan] ; Hormathan Mamtimin [République populaire de Chine] ; Mehfuzem Abdurahman [République populaire de Chine] ; Marygul Kurban [République populaire de Chine] ; Mihribangul Abdurusul [République populaire de Chine] ; Tursunay Mamtimin [République populaire de Chine] ; Muhtar Abdukerim [République populaire de Chine] ; Erkin Rahman [République populaire de Chine]

Source :

RBID : pubmed:28984556

Descripteurs français

English descriptors

Abstract

An endophytic bacterium, MA-69T, was isolated from the storage liquid in the stems of Populuseuphratica trees at the ancient Ugan River in Xinjiang, PR China. Strain MA-69T was found to be short rod-shaped, Gram-stain-negative, non-spore-forming, aerobic and motile by means of a monopolar flagellum. According to phylogenetic analysis based on 16S rRNA gene sequences, strain MA-69T was assigned to the genus Pseudomonas with highest 16S rRNA gene sequence similarity of 97.5 % to Pseudomonas azotifigens JCM 12708T, followed by Pseudomonas matsuisoli JCM 30078T (97.5 %), Pseudomonas balearica DSM 6083T (97.1 %), Azotobacter salinestris ATCC 49674T (96.1 %) and Pseudomonas indica DSM 14015T (95.9 %). Analysis of strain MA-69T based on the three housekeeping genes, rpoB, rpoD and gyrB, further confirmed the isolate to be distinctly delineated from species of the genus Pseudomonas. The DNA G+C content of strain MA-69T was 64.1 mol%. DNA-DNA hybridization with Pseudomonas azotifigens JCM 12708T, Pseudomonas matsuisoli JCM 30078T and Pseudomonas balearica DSM 6083T revealed 62.9, 60.1 and 49.0 % relatedness, respectively. The major fatty acids in strain MA-69T were summed feature 3 (25.7 %), summed feature 8 (24.0 %), C19 : 0cyclo ω8c (19.9 %), C16 : 0 (14.6 %) and C12 : 0 (6.3 %). The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. Q-9 was the major quinone in strain MA-69T. Based on phenotypic, chemotaxonomic and phylogenetic properties, strain MA-69T represents a novel species of the genus Pseudomonas, for which the name Pseudomonas tarimensis sp. nov. is proposed. The type strain is MA-69T (=CCTCC AB 2013065T=KCTC 42447T).

DOI: 10.1099/ijsem.0.002295
PubMed: 28984556


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Le document en format XML

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<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (chemistry)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
<term>Phospholipids (chemistry)</term>
<term>Phylogeny (MeSH)</term>
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<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Phospholipides (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Pseudomonas (classification)</term>
<term>Pseudomonas (génétique)</term>
<term>Pseudomonas (isolement et purification)</term>
<term>Techniques de typage bactérien (MeSH)</term>
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<term>RNA, Ribosomal, 16S</term>
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<term>Pseudomonas</term>
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<term>Acides gras</term>
<term>Phospholipides</term>
<term>Pseudomonas</term>
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<term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
<term>Pseudomonas</term>
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<term>Pseudomonas</term>
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<term>Pseudomonas</term>
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<term>Populus</term>
<term>Tiges de plante</term>
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<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Plant Stems</term>
<term>Populus</term>
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<term>Bacterial Typing Techniques</term>
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<term>Phylogeny</term>
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<term>Hybridation d'acides nucléiques</term>
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<front>
<div type="abstract" xml:lang="en">An endophytic bacterium, MA-69
<sup>T</sup>
, was isolated from the storage liquid in the stems of Populuseuphratica trees at the ancient Ugan River in Xinjiang, PR China. Strain MA-69
<sup>T</sup>
was found to be short rod-shaped, Gram-stain-negative, non-spore-forming, aerobic and motile by means of a monopolar flagellum. According to phylogenetic analysis based on 16S rRNA gene sequences, strain MA-69
<sup>T</sup>
was assigned to the genus Pseudomonas with highest 16S rRNA gene sequence similarity of 97.5 % to Pseudomonas azotifigens JCM 12708
<sup>T</sup>
, followed by Pseudomonas matsuisoli JCM 30078
<sup>T</sup>
(97.5 %), Pseudomonas balearica DSM 6083
<sup>T</sup>
(97.1 %), Azotobacter salinestris ATCC 49674
<sup>T</sup>
(96.1 %) and Pseudomonas indica DSM 14015
<sup>T</sup>
(95.9 %). Analysis of strain MA-69
<sup>T</sup>
based on the three housekeeping genes, rpoB, rpoD and gyrB, further confirmed the isolate to be distinctly delineated from species of the genus Pseudomonas. The DNA G+C content of strain MA-69
<sup>T</sup>
was 64.1 mol%. DNA-DNA hybridization with Pseudomonas azotifigens JCM 12708
<sup>T</sup>
, Pseudomonas matsuisoli JCM 30078
<sup>T</sup>
and Pseudomonas balearica DSM 6083
<sup>T</sup>
revealed 62.9, 60.1 and 49.0 % relatedness, respectively. The major fatty acids in strain MA-69
<sup>T</sup>
were summed feature 3 (25.7 %), summed feature 8 (24.0 %), C19 : 0cyclo ω8c (19.9 %), C16 : 0 (14.6 %) and C12 : 0 (6.3 %). The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. Q-9 was the major quinone in strain MA-69
<sup>T</sup>
. Based on phenotypic, chemotaxonomic and phylogenetic properties, strain MA-69
<sup>T</sup>
represents a novel species of the genus Pseudomonas, for which the name Pseudomonas tarimensis sp. nov. is proposed. The type strain is MA-69
<sup>T</sup>
(=CCTCC AB 2013065
<sup>T</sup>
=KCTC 42447
<sup>T</sup>
).</div>
</front>
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<Day>11</Day>
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<Title>International journal of systematic and evolutionary microbiology</Title>
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<ArticleTitle>Pseudomonas tarimensis sp. nov., an endophytic bacteria isolated from Populus euphratica.</ArticleTitle>
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<Abstract>
<AbstractText>An endophytic bacterium, MA-69
<sup>T</sup>
, was isolated from the storage liquid in the stems of Populuseuphratica trees at the ancient Ugan River in Xinjiang, PR China. Strain MA-69
<sup>T</sup>
was found to be short rod-shaped, Gram-stain-negative, non-spore-forming, aerobic and motile by means of a monopolar flagellum. According to phylogenetic analysis based on 16S rRNA gene sequences, strain MA-69
<sup>T</sup>
was assigned to the genus Pseudomonas with highest 16S rRNA gene sequence similarity of 97.5 % to Pseudomonas azotifigens JCM 12708
<sup>T</sup>
, followed by Pseudomonas matsuisoli JCM 30078
<sup>T</sup>
(97.5 %), Pseudomonas balearica DSM 6083
<sup>T</sup>
(97.1 %), Azotobacter salinestris ATCC 49674
<sup>T</sup>
(96.1 %) and Pseudomonas indica DSM 14015
<sup>T</sup>
(95.9 %). Analysis of strain MA-69
<sup>T</sup>
based on the three housekeeping genes, rpoB, rpoD and gyrB, further confirmed the isolate to be distinctly delineated from species of the genus Pseudomonas. The DNA G+C content of strain MA-69
<sup>T</sup>
was 64.1 mol%. DNA-DNA hybridization with Pseudomonas azotifigens JCM 12708
<sup>T</sup>
, Pseudomonas matsuisoli JCM 30078
<sup>T</sup>
and Pseudomonas balearica DSM 6083
<sup>T</sup>
revealed 62.9, 60.1 and 49.0 % relatedness, respectively. The major fatty acids in strain MA-69
<sup>T</sup>
were summed feature 3 (25.7 %), summed feature 8 (24.0 %), C19 : 0cyclo ω8c (19.9 %), C16 : 0 (14.6 %) and C12 : 0 (6.3 %). The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. Q-9 was the major quinone in strain MA-69
<sup>T</sup>
. Based on phenotypic, chemotaxonomic and phylogenetic properties, strain MA-69
<sup>T</sup>
represents a novel species of the genus Pseudomonas, for which the name Pseudomonas tarimensis sp. nov. is proposed. The type strain is MA-69
<sup>T</sup>
(=CCTCC AB 2013065
<sup>T</sup>
=KCTC 42447
<sup>T</sup>
).</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Anwar</LastName>
<ForeName>Nusratgul</ForeName>
<Initials>N</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Rozahon</LastName>
<ForeName>Manziram</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Zayadan</LastName>
<ForeName>Bolatkhan</ForeName>
<Initials>B</Initials>
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<Affiliation>Department of Biotechnology, Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, Kazakhstan.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Mamtimin</LastName>
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<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
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<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Kurban</LastName>
<ForeName>Marygul</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Abdurusul</LastName>
<ForeName>Mihribangul</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Mamtimin</LastName>
<ForeName>Tursunay</ForeName>
<Initials>T</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Abdukerim</LastName>
<ForeName>Muhtar</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Rahman</LastName>
<ForeName>Erkin</ForeName>
<Initials>E</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2017</Year>
<Month>10</Month>
<Day>06</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
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<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>1339-63-5</RegistryNumber>
<NameOfSubstance UI="D014451">Ubiquinone</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>MGW7TYF2DQ</RegistryNumber>
<NameOfSubstance UI="C030571">ubiquinone 9</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D011549" MajorTopicYN="N">Pseudomonas</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D014451" MajorTopicYN="N">Ubiquinone</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Populus euphratica</Keyword>
<Keyword MajorTopicYN="N">Pseudomonas</Keyword>
<Keyword MajorTopicYN="N">endophytic bacteria</Keyword>
</KeywordList>
</MedlineCitation>
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<PubMedPubDate PubStatus="pubmed">
<Year>2017</Year>
<Month>10</Month>
<Day>7</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2017</Year>
<Month>12</Month>
<Day>22</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2017</Year>
<Month>10</Month>
<Day>7</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">28984556</ArticleId>
<ArticleId IdType="doi">10.1099/ijsem.0.002295</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Kazakhstan</li>
<li>République populaire de Chine</li>
</country>
<region>
<li>Oblys d'Almaty</li>
</region>
<settlement>
<li>Almaty</li>
</settlement>
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<name sortKey="Anwar, Nusratgul" sort="Anwar, Nusratgul" uniqKey="Anwar N" first="Nusratgul" last="Anwar">Nusratgul Anwar</name>
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<name sortKey="Abdukerim, Muhtar" sort="Abdukerim, Muhtar" uniqKey="Abdukerim M" first="Muhtar" last="Abdukerim">Muhtar Abdukerim</name>
<name sortKey="Abdurahman, Mehfuzem" sort="Abdurahman, Mehfuzem" uniqKey="Abdurahman M" first="Mehfuzem" last="Abdurahman">Mehfuzem Abdurahman</name>
<name sortKey="Abdurusul, Mihribangul" sort="Abdurusul, Mihribangul" uniqKey="Abdurusul M" first="Mihribangul" last="Abdurusul">Mihribangul Abdurusul</name>
<name sortKey="Kurban, Marygul" sort="Kurban, Marygul" uniqKey="Kurban M" first="Marygul" last="Kurban">Marygul Kurban</name>
<name sortKey="Mamtimin, Hormathan" sort="Mamtimin, Hormathan" uniqKey="Mamtimin H" first="Hormathan" last="Mamtimin">Hormathan Mamtimin</name>
<name sortKey="Mamtimin, Tursunay" sort="Mamtimin, Tursunay" uniqKey="Mamtimin T" first="Tursunay" last="Mamtimin">Tursunay Mamtimin</name>
<name sortKey="Rahman, Erkin" sort="Rahman, Erkin" uniqKey="Rahman E" first="Erkin" last="Rahman">Erkin Rahman</name>
<name sortKey="Rozahon, Manziram" sort="Rozahon, Manziram" uniqKey="Rozahon M" first="Manziram" last="Rozahon">Manziram Rozahon</name>
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<country name="Kazakhstan">
<region name="Oblys d'Almaty">
<name sortKey="Zayadan, Bolatkhan" sort="Zayadan, Bolatkhan" uniqKey="Zayadan B" first="Bolatkhan" last="Zayadan">Bolatkhan Zayadan</name>
</region>
</country>
</tree>
</affiliations>
</record>

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